Kidney Precision Medicine Project

Kidney Tissue Atlas

The Kidney Tissue Atlas is a set of interactive tools built to promote retrieval, exploration, discovery, and analysis of the KPMP data by the greater research community.
Explorer

Search for markers or cell types of interest and view summary data visualizations across the various KPMP 'omics' technologies.

Repository

Download raw gene data generated from KPMP participant biopsies and reference tissue samples.

Spatial Viewer

View and interact with spatial data from various KPMP imaging technologies.

KPMP Central Biorepository

Learn more about ancillary study opportunities using KPMP biospecimens and other resources.

Atlas Data Summary

IMPORTANT: Please follow this citation guideline when presenting or publishing data from the Kidney Tissue Atlas.

PARTICIPANTS

350
CKD
78
AKI
29
DM-R
125
REFERENCE

Participants by -omics type

A subset of the raw data from the Data Repository has been analyzed and made available for interactive mining in Explorer and Spatial Viewer.

OMICS TYPE
REFERENCE
CKD
AKI
DM-R
ALL
No data

Files in the Data Repository by -omics type

The datasets available in the Repository are a combination of raw and processed data from KPMP participant biopsies and reference tissue samples.

OMICS TYPE
REFERENCE
CKD
AKI
DM-R
ALL
10x Multiome2715452191341169
3D Tissue Imaging and Cytometry252172424
ATAC-Seq17735714190765
Biomarkers711111111
Bulk Total/mRNA9469163
Clinical Study Data11111
CODEX4814312432347
CUT&RUN1432116629449
DNA Methyl-seq1048120
Imaging Mass Cytometry325650138
Light Microscopic Whole Slide Images11026757721933750
Multimodal Molecular Imaging81212840
Pathology Descriptor Scoring1111
Regional Proteomics195349119
Regional Transcriptomics67125129319
Segmentation Masks & Pathomics Vectors162564222
Single-cell RNA-Seq481491169401176
Single-nucleus RNA-Seq786575269751698
Spatial Lipidomics1476264120
Spatial Metabolomics241203812194
Spatial N-Glycomics122212854
Spatial Transcriptomics76244192512

TOTAL FILES: 10623